api Reference

See the GitHub repository for full reference documentation.

Quick CLI Reference

python3 omics_agent.py --demo          # Run all 15 skills
python3 omics_agent.py --chat          # Interactive chat mode
python3 omics_agent.py --skill scrna   # Run one skill
python3 omics_agent.py --list          # List all skills
python3 omics_agent.py --help          # Show all options

All Skill Names

genomics            transcriptomics     scrna
proteomics          metabolomics        epigenomics
spatial             metagenomics        sc_proteomics
integration         scatac              bulk_epigenomics
spatial_full        scTCR_BCR          sc_proteomics_full